Ignite Creation Date:
2024-05-06 @ 3:13 PM
Last Modification Date:
2024-10-26 @ 1:45 PM
Study NCT ID:
NCT04564235
Status:
UNKNOWN
Last Update Posted:
2020-09-25
First Post:
2020-09-21
Brief Title:
Risk of Recurrence of de Novo Mutations Research and Quantification of Paternal Germinal Mosaicism by the Combined Use of Genomic Tools
Sponsor:
University Hospital Rouen
Organization:
University Hospital Rouen
Study Overview
Official Title:
Risk of Recurrence of de Novo Mutations Research and Quantification of Paternal Germinal Mosaicism by the Combined Use of Genomic Tools
Status:
UNKNOWN
Status Verified Date:
2020-09
Last Known Status:
NOT_YET_RECRUITING
Delayed Posting:
No
If Stopped, Why?:
Not Stopped
Has Expanded Access:
False
If Expanded Access, NCT#:
N/A
Has Expanded Access, NCT# Status:
N/A
Acronym:
RRMUT
Brief Summary:
1 Inclusion of 5 families Inclusions will be made by the clinical genetics department of the Rouen University Hospital monocentric study and will correspond to trios of parents child with unexplained developmental abnormalities The inclusion of patients will be integrated in routine care and will have as immediate benefit for the included families the extensive analysis of the proband and their parents genomes by short and long read sequencing techniques which represent the most comprehensive diagnostic tests for developmental diseases and which are not currently routinely available Inclusion in clinical genetics by clinicians accustomed to prescribing genome-wide analyses will allow clear and complete information to families Collection of consents The trios DNA will already be available at the molecular genetics laboratory and a new blood sample may be proposed if necessary Collection of sperm from the father
2 Identification of a large set of de novo mutations Extraction of blood DNA and sending for sequencing of the complete genome to the National Centre for Research in Human Genomics CNRGH Evry in the framework of a collaboration already initiated Analysis of the sequencing data thanks to the already existing expertise in Rouen Identification of about 40-120 de novo mutations per trio At this stage interpretation of the variations identified with the secondary objective of identifying the cause of the disease in children Long read genomes will allow to phase the de novo variants to the paternal or to the maternal haplotype
3 Search for de novo mutations in paternal sperm samples Extraction of spermatic DNA Design of a sequencing panel targeting the genetic variations identified in the different trios Preparation of the libraries targeted high throughput sequencing at great depth thanks to the techniques and equipment already operational Specific search for the de novo variations identified in the probands in 2 with for each evaluation of i the presence of the variation in the sperm sample ii the quantity of mosaicism reflecting the proportion of carrier spermatozoa and therefore the risk of recurrence iii the presence of my variation in the blood sample of both parents in deep sequencing
2 Identification of a large set of de novo mutations Extraction of blood DNA and sending for sequencing of the complete genome to the National Centre for Research in Human Genomics CNRGH Evry in the framework of a collaboration already initiated Analysis of the sequencing data thanks to the already existing expertise in Rouen Identification of about 40-120 de novo mutations per trio At this stage interpretation of the variations identified with the secondary objective of identifying the cause of the disease in children Long read genomes will allow to phase the de novo variants to the paternal or to the maternal haplotype
3 Search for de novo mutations in paternal sperm samples Extraction of spermatic DNA Design of a sequencing panel targeting the genetic variations identified in the different trios Preparation of the libraries targeted high throughput sequencing at great depth thanks to the techniques and equipment already operational Specific search for the de novo variations identified in the probands in 2 with for each evaluation of i the presence of the variation in the sperm sample ii the quantity of mosaicism reflecting the proportion of carrier spermatozoa and therefore the risk of recurrence iii the presence of my variation in the blood sample of both parents in deep sequencing
Detailed Description:
None
Study Oversight
Has Oversight DMC:
None
Is a FDA Regulated Drug?:
False
Is a FDA Regulated Device?:
False
Is an Unapproved Device?:
None
Is a PPSD?:
None
Is a US Export?:
None
Is an FDA AA801 Violation?:
None